Soil salinity, a severe environmental factor, significantly reduces the productivity of crop plants by increasing salt and mineral fertilizer concentrations in the soil. As a result, the development of sustainable slow-release mineral fertilizers (SRFs) is critical for addressing salt-affected soils. This study aimed to synthesize struvite (MgNH₄PO₄·6H₂O) into hydrogel beads made from sodium alginate-poly (acrylic acid) in the absence (Sa@S) and presence (Sa@SHa) of humic acid (HA). The optimal conditions for struvite formation were at pH 9.0, resulting in a remarkable 73.21%, 98.74%, and 99.20% for Mg, NH₄-N and P removal, respectively. The SRFs study demonstrated that struvite had a significant release of Mg, P, and NH₄-N, notably higher (P ≤ 0.05) than Sa@S and Sa@SHa. Experiments on swelling and soil water loss demonstrated that Sa@S yielded higher results in comparison to Sa@SHa. Furthermore, an experiment was conducted to study the impact of Sa@S and Sa@SHa on saline soil parameters over 20 days of incubation. The results showed both encapsulated struvite hydrogel beads reduced soil salinity, as indicated by the sodium adsorption ratio (SAR) and exchangeable sodium percentage (ESP). Additionally, a significant reduction (P ≤ 0.05) in soil electrical conductivity (EC) and sodium (Na) was observed for both hydrogel bead encapsulation treatments compared to the control soil. However, no apparent variance was observed in pH and soil organic carbon (SOC). Moreover, the levels of available phosphorus (P), ammonium-nitrogen (NH₄-N), nitrate-nitrogen (NO₃-N), cation exchange capacity (CEC), and exchangeable cations (Ca, Mg, K) in the soil were observed to be increased (P ≤ 0.05).